Example Files
This is the place to find example program code and other files mentioned in the book. Our recommendation is to download all the files as a small single zip file by clicking here: bbsfiles.zip (56kb). The files are organised by chapter within the zip file.
Alternatively, you can download individual files from the list below, where they are organised according to where they appear in the book. Note that if you just click on their names, most of these files will just try to open in your browser – sometimes with odd results. To save them to your computer it is more convenient to right click on the file name and choose Save Link As … or Save Target As … from the menu that appears.
All example files are subject to copyright – please don’t redistribute them without permission.
Chapter 2: MySQL
Chapter 3: Perl
- p70. hello_world.pl
- p92. revcomp.pl
- p115. BRCA1.fasta
- p121. get_example.pl
- p122. eutils_example.pl
Chapter 4: R
- p153. blood.csv
- p155. profiles.csv
- p161. profiles.r
- p162. ssseq.r
- p164. rangescale.r
- p167. pca_example.r
Chapter 5: Web
- p194. test1.html
- p200. hello_world.pl
- p205. simple_gene_query.pl
- p208. gene_query.html
- p209. form_gene_query.pl
- p213. test1css.html
- p216-218. r-test.pl
- p219. barchart.pl (GD::Graph)
- p220. linechart.pl (GD::Graph)
- p222. gd_example.html, gd_example1.pl
- p225. barchart.pl (SVG::TT::Graph)
- p227. barchart2.pl (SVG::TT::Graph)
- p228. svg_example.html, svg_example1.pl
- p229. svg_example2.pl